我希望能得到一些帮助或示例,关于如何在R中计算变量组合的ICC(类内相关系数)。
现在我想对所有2个基因的组合(列是基因名称)进行详尽的搜索,并计算相应的ICC,然后是3个基因的组合,再然后是4个。之后,我希望按ICC值对组合进行排序并列出。
输出看起来会像这样
我尝试使用下面的代码来做同样的事情,但我很难处理这个详尽的搜索和组合问题
mat1 <- as.matrix(lmm_1[,1:10])icc(mat1, model = c("t"),r0 = 0,conf.level = 0.95)icc(lmer( YWHAZ~ ., data = mat1))
我的数据框结构lmm_1如下,请帮助解决这个问题
structure(list(`HKG1 (18S)` = c(140922.090379318, 114050.66128233, 231970.660810084), `HKG2 (GAPDH)` = c(5821646.94272285, 4054004.07527754, 8279934.32892469), `HKG3 (ACTB)` = c(513559.47728841, 682673.286801917, 890579.00053991), `HKG4 (HMBS)` = c(963904.825829829, 1298738.62059259, 2091567.68645239), `HKG5 (HPRT)` = c(5508533.08283376, 5516876.07150713, 10236502.8076606), `HKG6 (SDHA)` = c(115259.913117015, 127680.131645604, 260533.935040935), `HKG7 (PABPN1)` = c(1483557.685172, 1212117.22511327, 1823406.16115662), `HKG8 (TBP)` = c(1835256.87785655, 1633084.68373014, 2478000.07992693), `HKG9 (YWHAG` = c(5892446.87038693, 6039118.46057885, 11746762.2003624), `HKG10 (YWHAZ )` = c(250987.289730308, 250536.411475335, 814508.745534441), Group = structure(c(1L, 1L, 1L), .Label = c("1", "2", "3", "4", "5", "6"), class = "factor"), ID = c(1, 2, 3)), row.names = c(NA, 3L), class = "data.frame")
回答:
这是一个可能有帮助的快速代码示例(第二个示例)。https://www.kaggle.com/rtatman/intraclass-correlation-coefficients-example/